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Okay, the EU decided to change how booster vaccination certificates are issued if the booster is a vaccination on top of a 1/1 basic vaccination. See https://ec.europa.eu/commission/presscorner/detail/en/ip_21_6837:

"Boosters will be recorded as follows:

  • 3/3 for a booster dose following a primary 2-dose vaccination series.
  • 2/1 for a booster dose following a single-dose vaccination or a one dose of a 2-dose vaccine administered to a recovered person."

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