Merge pull request #254 from CamDavidsonPilon/pandas-check

v0.11.1

Author: CamDavidsonPilon

.travis.yml

@@ -6,9 +6,6 @@ python:
    - "3.5"
    - "3.6"
 env:
-- export PANDAS_VERSION=0.21.1
-- export PANDAS_VERSION=0.22.0
-- export PANDAS_VERSION=0.23.4
 - export PANDAS_VERSION=0.24.1
 # Enable newer 3.7 without globally enabling sudo and dist: xenial for other build jobs
 matrix:
@@ -17,14 +14,11 @@ matrix:
     dist: xenial
     sudo: true
     env: export PANDAS_VERSION=0.24.1
-  - python: 3.7
-    dist: xenial
-    sudo: true
-    env: export PANDAS_VERSION=0.23.4
 before_install:
   - ls
 install:
   - "pip install -r dev_requirements.txt"
+  - "pip install pandas==$PANDAS_VERSION"
 # command to run tests
 script:
   - py.test --cov lifetimes

CHANGELOG.md

@@ -1,5 +1,9 @@
 # Changelog
 
+### 0.11.1
+ - bump the Pandas requirements to >= 0.24.0. This should have been done in 0.11.0
+ - suppress some warnings from autograd.
+
 ### 0.11.0
  - Move most models (all but Pareto) to autograd for automatic differentiation of their likelihood. This results in faster (at least 3x) and more successful convergence, plus allows for some really exciting extensions (coming soon).
  - `GammaGammaFitter`, `BetaGeoFitter`, `ModifiedBetaGeoFitter` and `BetaGeoBetaBinomFitter` have three new attributes: `confidence_interval_`, `variance_matrix_` and `standard_errors_`

docs/Changelog.rst

@@ -1,6 +1,15 @@
 Changelog
 =========
 
+0.11.1
+~~~~~~
+
+-  bump the Pandas requirements to >= 0.24.0. This should have been done
+   in 0.11.0
+-  suppress some warnings from autograd.
+
+.. _section-1:
+
 0.11.0
 ~~~~~~
 
@@ -20,7 +29,7 @@ Changelog
 -  fixed a bug that was causing ``ParetoNBDFitter`` to generate data
    incorrectly.
 
-.. _section-1:
+.. _section-2:
 
 0.10.1
 ~~~~~~
@@ -38,7 +47,7 @@ Changelog
 -  Stop support of scipy < 1.0.
 -  Stop support of < Python 3.5.
 
-.. _section-2:
+.. _section-3:
 
 0.10.0
 ~~~~~~
@@ -57,7 +66,7 @@ Changelog
    used to reduce the size of the data (collapsing subjects with the
    same recency, frequency, T).
 
-.. _section-3:
+.. _section-4:
 
 0.9.1
 ~~~~~
@@ -74,7 +83,7 @@ Changelog
    difference in values compared to ``summary_from_transaction_data``.
    @DaniGate
 
-.. _section-4:
+.. _section-5:
 
 0.9.0
 ~~~~~
@@ -86,7 +95,7 @@ Changelog
 -  Fixed a bug in ``expected_cumulative_transactions`` and
    ``plot_cumulative_transactions``
 
-.. _section-5:
+.. _section-6:
 
 0.8.1
 ~~~~~

docs/Quickstart.md

@@ -41,6 +41,15 @@ print(bgf)
 """
 <lifetimes.BetaGeoFitter: fitted with 2357 subjects, a: 0.79, alpha: 4.41, b: 2.43, r: 0.24>
 """
+
+bgf.summary
+"""
+           coef  se(coef)  lower 95% bound  upper 95% bound
+r      0.242593  0.012557         0.217981         0.267205
+alpha  4.413532  0.378221         3.672218         5.154846
+a      0.792886  0.185719         0.428877         1.156895
+b      2.425752  0.705345         1.043276         3.808229
+"""
 ```
 
 After fitting, we have lots of nice methods and properties attached to the fitter object, like ``param_`` and ``summary``.

docs/conf.py

@@ -22,16 +22,17 @@
 # sys.path.insert(0, os.path.abspath('.'))
 
 import sphinx_rtd_theme
+
 html_theme = "sphinx_rtd_theme"
 html_theme_path = [sphinx_rtd_theme.get_html_theme_path()]
 
 # Convert package README.md to intro.rst to include in index.rst for docs
 try:
     import pypandoc
-    long_description = pypandoc.convert_file('../README.md', 'rst',
-                                             outputfile='intro.rst')
-except(ImportError):
-    print('Install pypandoc to convert README.md to intro.rst')
+
+    long_description = pypandoc.convert_file("../README.md", "rst", outputfile="intro.rst")
+except (ImportError):
+    print("Install pypandoc to convert README.md to intro.rst")
 
 
 # -- General configuration ------------------------------------------------
@@ -44,40 +45,38 @@
 # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
 # ones.
 extensions = [
-    'sphinx.ext.autodoc',
-    'sphinx.ext.todo',
-    'sphinx.ext.coverage',
-    'sphinx.ext.mathjax',
-    'sphinx.ext.napoleon'
+    "sphinx.ext.autodoc",
+    "sphinx.ext.todo",
+    "sphinx.ext.coverage",
+    "sphinx.ext.mathjax",
+    "sphinx.ext.napoleon",
 ]
 
 # Add any paths that contain templates here, relative to this directory.
-templates_path = ['_templates']
+templates_path = ["_templates"]
 
 # for parsing markdown files
-source_parsers = {
-    '.md': 'recommonmark.parser.CommonMarkParser',
-}
+source_parsers = {".md": "recommonmark.parser.CommonMarkParser"}
 
 # The suffix(es) of source filenames.
 # You can specify multiple suffix as a list of string:
 #
-source_suffix = ['.rst', '.md']
+source_suffix = [".rst", ".md"]
 
 # The master toctree document.
-master_doc = 'index'
+master_doc = "index"
 
 # General information about the project.
-project = 'lifetimes'
-copyright = '2015, Cameron Davidson-Pilon'
-author = 'Cameron Davidson-Pilon'
+project = "lifetimes"
+copyright = "2015, Cameron Davidson-Pilon"
+author = "Cameron Davidson-Pilon"
 
 # The version info for the project you're documenting, acts as replacement for
 # |version| and |release|, also used in various other places throughout the
 # built documents.
 #
 # The short X.Y version.
-version = '0.11.0'
+version = "0.11.1"
 # The full version, including alpha/beta/rc tags.
 release = version
 
@@ -91,10 +90,10 @@
 # List of patterns, relative to source directory, that match files and
 # directories to ignore when looking for source files.
 # This patterns also effect to html_static_path and html_extra_path
-exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store']
+exclude_patterns = ["_build", "Thumbs.db", ".DS_Store"]
 
 # The name of the Pygments (syntax highlighting) style to use.
-pygments_style = 'sphinx'
+pygments_style = "sphinx"
 
 # If true, `todo` and `todoList` produce output, else they produce nothing.
 todo_include_todos = True
@@ -117,7 +116,7 @@
 # Add any paths that contain custom static files (such as style sheets) here,
 # relative to this directory. They are copied after the builtin static files,
 # so a file named "default.css" will overwrite the builtin "default.css".
-html_static_path = ['_static']
+html_static_path = ["_static"]
 
 # -- Napoleon settings ----------------------------------------------------
 napoleon_google_docstring = True
@@ -137,7 +136,7 @@
 # -- Options for HTMLHelp output ------------------------------------------
 
 # Output file base name for HTML help builder.
-htmlhelp_basename = 'lifetimesdoc'
+htmlhelp_basename = "lifetimesdoc"
 
 
 # -- Options for LaTeX output ---------------------------------------------
@@ -146,15 +145,12 @@
     # The paper size ('letterpaper' or 'a4paper').
     #
     # 'papersize': 'letterpaper',
-
     # The font size ('10pt', '11pt' or '12pt').
     #
     # 'pointsize': '10pt',
-
     # Additional stuff for the LaTeX preamble.
     #
     # 'preamble': '',
-
     # Latex figure (float) alignment
     #
     # 'figure_align': 'htbp',
@@ -163,20 +159,14 @@
 # Grouping the document tree into LaTeX files. List of tuples
 # (source start file, target name, title,
 #  author, documentclass [howto, manual, or own class]).
-latex_documents = [
-    (master_doc, 'lifetimes.tex', 'lifetimes Documentation',
-     'Cameron Davidson-Pilon', 'manual'),
-]
+latex_documents = [(master_doc, "lifetimes.tex", "lifetimes Documentation", "Cameron Davidson-Pilon", "manual")]
 
 
 # -- Options for manual page output ---------------------------------------
 
 # One entry per manual page. List of tuples
 # (source start file, name, description, authors, manual section).
-man_pages = [
-    (master_doc, 'lifetimes', 'lifetimes Documentation',
-     [author], 1)
-]
+man_pages = [(master_doc, "lifetimes", "lifetimes Documentation", [author], 1)]
 
 
 # -- Options for Texinfo output -------------------------------------------
@@ -185,7 +175,13 @@
 # (source start file, target name, title, author,
 #  dir menu entry, description, category)
 texinfo_documents = [
-    (master_doc, 'lifetimes', 'lifetimes Documentation',
-     author, 'lifetimes', 'One line description of project.',
-     'Miscellaneous'),
+    (
+        master_doc,
+        "lifetimes",
+        "lifetimes Documentation",
+        author,
+        "lifetimes",
+        "One line description of project.",
+        "Miscellaneous",
+    )
 ]

docs/index.rst

@@ -12,6 +12,7 @@
    Quickstart
    Saving and loading model
    More examples and recipes
+   lifetimes
    Changelog
 
 

lifetimes/fitters/__init__.py

@@ -1,5 +1,8 @@
 # -*- coding: utf-8 -*-
 """Base fitter for other classes."""
+import warnings
+
+warnings.simplefilter(action="ignore", category=FutureWarning)
 import dill
 import numpy as np
 import pandas as pd

lifetimes/fitters/beta_geo_beta_binom_fitter.py

@@ -2,6 +2,9 @@
 """Beta Geo Beta BinomFitter."""
 from __future__ import division
 from __future__ import print_function
+import warnings
+
+warnings.simplefilter(action="ignore", category=FutureWarning)
 
 import numpy as np
 import pandas as pd
@@ -62,6 +65,8 @@ def __init__(self, penalizer_coef=0.0):
 
     @staticmethod
     def _loglikelihood(params, x, tx, T):
+        warnings.simplefilter(action="ignore", category=FutureWarning)
+
         """Log likelihood for optimizer."""
         alpha, beta, gamma, delta = params
 

lifetimes/fitters/beta_geo_fitter.py

@@ -2,6 +2,7 @@
 """Beta Geo Fitter, also known as BG/NBD model."""
 from __future__ import print_function
 from __future__ import division
+import warnings
 
 import pandas as pd
 import autograd.numpy as np
@@ -146,6 +147,8 @@ def fit(
 
     @staticmethod
     def _negative_log_likelihood(log_params, freq, rec, T, weights, penalizer_coef):
+        warnings.simplefilter(action="ignore", category=FutureWarning)
+
         params = np.exp(log_params)
         r, alpha, a, b = params
 

lifetimes/fitters/gamma_gamma_fitter.py

@@ -1,6 +1,7 @@
 # -*- coding: utf-8 -*-
 from __future__ import print_function
 from __future__ import division
+import warnings
 
 import pandas as pd
 from autograd import numpy as np
@@ -68,6 +69,7 @@ def __init__(self, penalizer_coef=0.0):
 
     @staticmethod
     def _negative_log_likelihood(log_params, frequency, avg_monetary_value, weights, penalizer_coef):
+        warnings.simplefilter(action="ignore", category=FutureWarning)
 
         params = np.exp(log_params)
         p, q, v = params