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schutzekatze
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Only run rresolver in Bloom filter mode
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bin/abyss-pe

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Original file line numberDiff line numberDiff line change
@@ -562,9 +562,17 @@ endif
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# Resolve repeats with short reads
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ifdef B
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%-1-rr.fa %-1-rr.$g: %-1.fa %-1.$g
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$(gtime) abyss-rresolver-short $v -b$B -j$j -k$k $(RRESOLVER_OPTIONS) \
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-h $*-1-rr --$g -c $*-1-rr.fa -g $*-1-rr.$g $^ $(in) $(se)
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else
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%-1-rr.fa: %-1.fa
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ln -s $< $@
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%-1-rr.$g: %-1.$g
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ln -s $< $@
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endif
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# Remove shim contigs
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